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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b3o H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.933
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.929
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.927
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.927
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.925
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.925
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.924
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.924
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.921
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.919
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.913
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.912
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.911
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.911
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.911
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.911
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.910
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.910
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.910
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.909
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.909
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.909
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.909
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.909
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.908
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.908
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.908
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.908
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.906
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.906
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.906
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.905
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.904
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.903
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.903
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.902
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.902
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.902
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.892
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.892
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.892
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.891
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.891
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.890
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.890
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.889
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.889
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.889
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.889
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.888
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.888
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.888
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.888
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.888
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.887
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.887
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.887
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.887
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.886
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.886
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.885
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.885
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.883
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.882
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.880
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.877
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.877
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.875
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.875
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.874
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.874
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.873
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.872
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.871
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.871
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.870
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.870
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.870
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.867
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.863
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.862
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.860
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.858
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.858
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.858
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.857
3png H4BNitric oxide synthase, brain 1.14.13.39 0.855
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.854
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.851
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.851
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.850
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.846
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.846
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.839
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.824
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.822
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.821
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.815
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.815
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.811
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.808
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.805
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.784
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.781
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.760
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.737
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.727
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.722
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.721
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.705
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.702
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.699
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.674
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.661
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.657
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.653