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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b28 B2X Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3b28 B2XHeat shock protein HSP 90-alpha / 0.957
3wha WHAHeat shock protein HSP 90-alpha / 0.903
3rlp 3RPHeat shock protein HSP 90-alpha / 0.803
3r4n FU5Heat shock protein HSP 90-alpha / 0.766
2wi6 ZZ6Heat shock protein HSP 90-alpha / 0.754
2xhr C0PHeat shock protein HSP 90-alpha / 0.750
3vha VHAHeat shock protein HSP 90-alpha / 0.743
4fcq 2N6Heat shock protein HSP 90-alpha / 0.740
3r4p FU7Heat shock protein HSP 90-alpha / 0.725
3rlr 3RRHeat shock protein HSP 90-alpha / 0.716
3r4o FU3Heat shock protein HSP 90-alpha / 0.702
2qfo A13Heat shock protein HSP 90-alpha / 0.685
4fcr 0TMHeat shock protein HSP 90-alpha / 0.669
3peh IBDEndoplasmin homolog, putative / 0.663
3rlq 3RQHeat shock protein HSP 90-alpha / 0.661