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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ayk CGS Interstitial collagenase 3.4.24.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ayk CGSInterstitial collagenase 3.4.24.7 0.885
4ayk CGSInterstitial collagenase 3.4.24.7 0.796
1bzs BSINeutrophil collagenase 3.4.24.34 0.680
1zvx FINNeutrophil collagenase 3.4.24.34 0.670
1zxc IH6Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.667
2ow0 6MRMatrix metalloproteinase-9 3.4.24.35 0.653
1hy7 MBSStromelysin-1 3.4.24.17 0.651