Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3awh FMN FMN-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3awh FMNFMN-binding protein / 1.071
3vy5 FMNFMN-binding protein / 1.047
3a6r FMNFMN-binding protein / 1.038
3vy2 FMNFMN-binding protein / 1.032
3a6q FMNFMN-binding protein / 1.028
3amf FMNFMN-binding protein / 1.028
3a20 FMNFMN-binding protein / 1.011
2e83 FMNFMN-binding protein / 1.008
1flm FMNFMN-binding protein / 1.007
1wli FMNFMN-binding protein / 0.978
1wlk FMNFMN-binding protein / 0.938
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.706
3e4v FMNUncharacterized protein / 0.678
3qe2 FADNADPH--cytochrome P450 reductase / 0.677
3qfs FADNADPH--cytochrome P450 reductase / 0.672
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.672
2vnk FADNADPH:ferredoxin reductase / 0.670
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.669
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.666
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.665
3qfc FADNADPH--cytochrome P450 reductase / 0.664
2vnh FADNADPH:ferredoxin reductase / 0.663
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.663
4yao FADNADPH--cytochrome P450 reductase / 0.661
2pia FMNPhthalate dioxygenase reductase / 0.660
2qdx FADFerredoxin--NADP+ reductase / 0.659
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.657
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.657
4yau FADNADPH--cytochrome P450 reductase / 0.657
2bgj FADNADPH:ferredoxin reductase / 0.655
4b4d FADFerredoxin-NADP reductase / 0.655
4y7c FADNADPH--cytochrome P450 reductase / 0.655
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.654
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.654
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.652
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.651
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.651
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.651
2vnj FADNADPH:ferredoxin reductase / 0.651