Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3att ATP Putative aminoglycoside phosphotransferase 2.7.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3att ATPPutative aminoglycoside phosphotransferase 2.7.1 0.949
2pui ADPMethylthioribose kinase 2.7.1.100 0.745
2pyw ADPMethylthioribose kinase 2.7.1.100 0.745
3gu6 ADPDeath-associated protein kinase 1 2.7.11.1 0.743
2olc ADPMethylthioribose kinase 2.7.1.100 0.731
2pul ACPMethylthioribose kinase 2.7.1.100 0.731
2pup ADPMethylthioribose kinase 2.7.1.100 0.729
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.728
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.721
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.719
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.719
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.717
1daw ANPCasein kinase II subunit alpha 2.7.11.1 0.715
2pun ACPMethylthioribose kinase 2.7.1.100 0.715
3g8d ADPBiotin carboxylase 6.3.4.14 0.715
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.713
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.711
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.711
1zth ADPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.709
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.705
1zp9 ATPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.705
3dfc ANPDeath-associated protein kinase 1 2.7.11.1 0.704
1o6y ACPSerine/threonine-protein kinase PknB 2.7.11.1 0.702
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.699
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.699
3wo1 ADPAlanine--anticapsin ligase / 0.697
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.695
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.694
1jkl ANPDeath-associated protein kinase 1 2.7.11.1 0.693
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.692
3udz ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.691
4k33 ACPFibroblast growth factor receptor 3 2.7.10.1 0.691
3x2u ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.690
1tqm ANPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.689
3tm0 ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.689
4ysj ADPCalmodulin-like domain protein kinase / 0.689
2if8 ADPInositol polyphosphate multikinase 2.7.1.151 0.688
2bkk ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.687
3gu7 ADPDeath-associated protein kinase 1 2.7.11.1 0.686
4utd ACPAurora kinase A 2.7.11.1 0.686
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.685
3rv4 ADPBiotin carboxylase 6.3.4.14 0.683
3t8o ATPRhodopsin kinase / 0.682
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.681
4gyi ADPUncharacterized protein / 0.681
4dee ADPAurora kinase A 2.7.11.1 0.680
4y0x ADPSerine/threonine-protein kinase PknG 2.7.11.1 0.680
1jnk ANPMitogen-activated protein kinase 10 2.7.11.24 0.679
1zao ATPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.679
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.679
4nm0 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.679
4ceg ADPAurora kinase A 2.7.11.1 0.678
4ckj ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.678
2qcs ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.677
3c4w ATPRhodopsin kinase / 0.677
4nm5 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.677
4nm7 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.677
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.676
4ifc ADPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.676
1tqp ATPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.675
2hgs ADPGlutathione synthetase 6.3.2.3 0.675
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.674
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.674
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.674
4jqe ANPCasein kinase II subunit alpha 2.7.11.1 0.673
4o4d ATPKinase / 0.673
2vqd AP2Biotin carboxylase 6.3.4.14 0.672
2j9g ADPBiotin carboxylase 6.3.4.14 0.671
4bn1 ADPAurora kinase A 2.7.11.1 0.671
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.670
1csn ATPCasein kinase I homolog 1 2.7.11.1 0.669
4o1p ANPRibonuclease L / 0.669
4xlv ACPInsulin receptor 2.7.10.1 0.669
4axf ANPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.668
4dh3 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
4dt8 ADNAPH(2'')-Id / 0.668
4iay ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
2vuw 5IDSerine/threonine-protein kinase haspin 2.7.11.1 0.667
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.667
4ej7 ATPAminoglycoside 3'-phosphotransferase AphA1-IAB / 0.667
4fmq ANPMitogen-activated protein kinase 1 2.7.11.24 0.667
4y12 AGSSerine/threonine-protein kinase PknG 2.7.11.1 0.667
2wqe ADPAurora kinase A 2.7.11.1 0.666
4ix5 ANPUncharacterized protein / 0.666
3c4z ADPRhodopsin kinase / 0.665
3f5u ANPDeath-associated protein kinase 1 2.7.11.1 0.665
2ijm ADPFocal adhesion kinase 1 2.7.10.2 0.664
2y9q ANPMitogen-activated protein kinase 1 2.7.11.24 0.664
3gu5 ANPDeath-associated protein kinase 1 2.7.11.1 0.664
1jkk ANPDeath-associated protein kinase 1 2.7.11.1 0.663
3kn5 ANPRibosomal protein S6 kinase alpha-5 2.7.11.1 0.663
1mru AGSSerine/threonine-protein kinase PknB 2.7.11.1 0.662
3a99 ANPSerine/threonine-protein kinase pim-1 2.7.11.1 0.662
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.661
2zdg ADPD-alanine--D-alanine ligase / 0.661
3cly ACPFibroblast growth factor receptor 2 / 0.661
1ol6 ATPAurora kinase A 2.7.11.1 0.660
1u54 ACPActivated CDC42 kinase 1 / 0.660
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.660
3nie ANPMitogen-activated protein kinase / 0.660
4dta ADNAPH(2'')-Id / 0.660
1q24 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.658
3oro AGSSerine/threonine protein kinase / 0.658
3qc9 ADPRhodopsin kinase / 0.658
5cvh ADPCasein kinase II subunit alpha 2.7.11.1 0.657
2ijm ATPFocal adhesion kinase 1 2.7.10.2 0.656
3c4x ATPRhodopsin kinase / 0.656
5c1o ANPD-alanine--D-alanine ligase / 0.656
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
1w2c ANPInositol-trisphosphate 3-kinase A 2.7.1.127 0.654
2pz5 ACPFibroblast growth factor receptor 2 / 0.654
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.654
4lfi GNPCasein kinase II subunit alpha 2.7.11.1 0.653
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.653
1pyx ANPGlycogen synthase kinase-3 beta 2.7.11.26 0.652
3eth ATPN5-carboxyaminoimidazole ribonucleotide synthase / 0.652
5eg3 ACPFibroblast growth factor receptor 2 / 0.652
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651
5dr2 ATPAurora kinase A 2.7.11.1 0.651
3zxt ACPDeath-associated protein kinase 1 2.7.11.1 0.650
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.650
4ocp ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.650
4wbb ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650
4ww9 ADPEKC/KEOPS complex subunit BUD32 3.6 0.650