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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3aq0 ISY Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial 2.5.1.85

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3aq0 ISYSolanesyl diphosphate synthase 3, chloroplastic/mitochondrial 2.5.1.85 0.960
1l2t ATPUncharacterized ABC transporter ATP-binding protein MJ0796 / 0.673
1tf7 ATPCircadian clock protein kinase KaiC 2.7.11.1 0.656
1u9i ATPCircadian clock protein kinase KaiC 2.7.11.1 0.656
2q0l NAPThioredoxin reductase 1.8.1.9 0.656
2qo7 ANPEphrin type-A receptor 3 2.7.10.1 0.656
1zha PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.655
2gbl ATPCircadian clock protein kinase KaiC 2.7.11.1 0.654
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 0.651
4ccq NAPThioredoxin reductase / 0.651