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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3apy FAD Methylenetetrahydrofolate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3apy FADMethylenetetrahydrofolate reductase / 1.350
1v93 FADMethylenetetrahydrofolate reductase / 1.181
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.054
1zp3 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.011
1b5t FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.979
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.957
1zrq FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.917
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.896
2fmo FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.831
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.782
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.660