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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3am5 TCL Enoyl-ACP reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3am5 TCLEnoyl-ACP reductase / 1.025
3lt1 FT2Enoyl-ACP reductase / 0.978
3am3 TCLEnoyl-ACP reductase / 0.950
3lt0 FT1Enoyl-ACP reductase / 0.924
3lt2 FT3Enoyl-ACP reductase / 0.915
2o2y TCLEnoyl-ACP reductase / 0.893
1nhg TCLEnoyl-ACP reductase / 0.886
1uh5 TCLEnoyl-ACP reductase / 0.869
3am4 FT1Enoyl-ACP reductase / 0.851
2o2s TCLEnoyl-acyl carrier reductase / 0.845
4ige CHJEnoyl-acyl carrier reductase / 0.838
2foi JPAEnoyl-acyl carrier reductase / 0.833
1nnu TCTEnoyl-ACP reductase / 0.795
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4igf CHVEnoyl-acyl carrier reductase / 0.736
1nhw TCCEnoyl-ACP reductase / 0.734
3lsy FT0Enoyl-ACP reductase / 0.707
5cp8 TCUEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.704
1zxl JP1Enoyl-ACP reductase / 0.703
1zw1 TN5Enoyl-ACP reductase / 0.699
2op0 7PCEnoyl-ACP reductase / 0.674
1zsn TN2Enoyl-ACP reductase / 0.672
2b35 TCLEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
2op1 8PCEnoyl-ACP reductase / 0.667
4rw6 494Gag-Pol polyprotein 2.7.7.49 0.661
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3fne 8PCEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.656
3nj8 NJ8Enoyl-acyl carrier reductase / 0.653