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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ah5 FAD Flavin-dependent thymidylate synthase 2.1.1.148

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ah5 FADFlavin-dependent thymidylate synthase 2.1.1.148 1.290
3g4a FADFlavin-dependent thymidylate synthase 2.1.1.148 0.937
5ios FADFlavin-dependent thymidylate synthase 2.1.1.148 0.922
1o29 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.825
3n0c FADFlavin-dependent thymidylate synthase 2.1.1.148 0.813
3gwc FADFlavin-dependent thymidylate synthase 2.1.1.148 0.782
2af6 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.745
4p5a FADFlavin-dependent thymidylate synthase / 0.733
3n0b FADFlavin-dependent thymidylate synthase 2.1.1.148 0.700
4gtl FADFlavin-dependent thymidylate synthase 2.1.1.148 0.668
3hzg FADFlavin-dependent thymidylate synthase 2.1.1.148 0.662
4gte FADFlavin-dependent thymidylate synthase 2.1.1.148 0.659
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.657