Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3afh GSU Glutamate--tRNA ligase 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3afh GSUGlutamate--tRNA ligase 2 / 1.154
2re8 GSUGlutamine--tRNA ligase 6.1.1.18 0.699
2rd2 QSIGlutamine--tRNA ligase 6.1.1.18 0.682
3w0c 6DSVitamin D3 receptor / 0.663
1pg0 MODMethionine--tRNA ligase 6.1.1.10 0.655
3ziu LSSLeucyl-tRNA synthetase / 0.655
2ct8 MSPMethionine--tRNA ligase 6.1.1.10 0.653
4ubs DIFPentalenic acid synthase 1.14.15.11 0.652