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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ab8 ATP Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ab8 ATPUncharacterized protein / 1.137
2z08 ATPUniversal stress protein family / 0.923
3s3t ATPUniversal stress protein / 0.890
1mjh ATPUniversal stress protein MJ0577 / 0.830
4r2l ATPUniversal stress protein F / 0.817
3hgm ATPTRAP-T-associated universal stress protein TeaD / 0.814
3cis ATPUniversal stress protein Rv2623 / 0.770
3tw6 ADPPyruvate carboxylase / 0.693
4l2i FADElectron transfer flavoprotein alpha/beta-subunit / 0.690
4x3l MTARNA 2'-O ribose methyltransferase / 0.687
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.678
1v9a SAHUncharacterized protein / 0.676
1g6n CMPcAMP-activated global transcriptional regulator CRP / 0.673
2qbu SAHPrecorrin-2 methyltransferase / 0.673
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.673
2ha8 SAHProbable methyltransferase TARBP1 / 0.668
4kgn SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.667
3wo0 ADPAlanine--anticapsin ligase / 0.665
4cng SAHSpoU rRNA methylase / 0.665
2ybo SAHMethyltransferase / 0.662
1kor ANPArgininosuccinate synthase / 0.661
1i5z CMPcAMP-activated global transcriptional regulator CRP / 0.659
2npn SAMPutative cobalamin synthesis related protein / 0.659
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.658
4hzf CMPcAMP-activated global transcriptional regulator CRP / 0.658
4kpu FADElectron transfer flavoprotein alpha/beta-subunit / 0.658
1cgp CMPcAMP-activated global transcriptional regulator CRP / 0.654
1j21 ATPArgininosuccinate synthase / 0.654
2ejk SAHDiphthine synthase / 0.653
2eld SAHDiphthine synthase / 0.653
3gu7 ADPDeath-associated protein kinase 1 2.7.11.1 0.653
4i0b CMPcAMP-activated global transcriptional regulator CRP / 0.653
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.652
2p5f SAHDiphthine synthase / 0.652
4i0a CMPcAMP-activated global transcriptional regulator CRP / 0.652