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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3a6q FMN FMN-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3a6q FMNFMN-binding protein / 1.107
3a6r FMNFMN-binding protein / 1.084
3vy2 FMNFMN-binding protein / 1.084
1flm FMNFMN-binding protein / 1.047
3vy5 FMNFMN-binding protein / 1.029
3a20 FMNFMN-binding protein / 1.028
3awh FMNFMN-binding protein / 1.028
2e83 FMNFMN-binding protein / 1.020
3amf FMNFMN-binding protein / 1.017
1wli FMNFMN-binding protein / 1.007
1wlk FMNFMN-binding protein / 1.003
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.742
3e4v FMNUncharacterized protein / 0.710
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.707
3qe2 FADNADPH--cytochrome P450 reductase / 0.699
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.696
2vnh FADNADPH:ferredoxin reductase / 0.695
2vnj FADNADPH:ferredoxin reductase / 0.695
2rc5 FADFerredoxin--NADP reductase / 0.692
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.688
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.686
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.684
1zy8 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.683
4b4d FADFerredoxin-NADP reductase / 0.682
3qfs FADNADPH--cytochrome P450 reductase / 0.681
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.680
4yau FADNADPH--cytochrome P450 reductase / 0.679
1cqx FADFlavohemoprotein / 0.678
2bn4 FADNADPH--cytochrome P450 reductase / 0.678
4y9u FADNADPH--cytochrome P450 reductase / 0.678
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.677
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.677
3ojw FADNADPH--cytochrome P450 reductase / 0.677
1ci0 FMNPyridoxamine 5'-phosphate oxidase 1.4.3.5 0.674
3m0o FADMonomeric sarcosine oxidase 1.5.3.1 0.673
4y7c FADNADPH--cytochrome P450 reductase / 0.673
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.673
2bgj FADNADPH:ferredoxin reductase / 0.672
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.672
2vnk FADNADPH:ferredoxin reductase / 0.672
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.672
4y9r FADNADPH--cytochrome P450 reductase / 0.671
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.671
1gaw FADFerredoxin / 0.670
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.669
1f8r FADL-amino-acid oxidase 1.4.3.2 0.667
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.667
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.666
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.666
2ptf FMNUncharacterized protein MTH_863 / 0.665
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.665
4fk8 FADFerredoxin--NADP reductase / 0.665
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.664
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.664
4rek FADCholesterol oxidase 1.1.3.6 0.664
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.664
4yao FADNADPH--cytochrome P450 reductase / 0.664
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.663
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.663
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.663
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.663
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.663
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.662
3r5y F42Uncharacterized protein / 0.662
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.662
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.661
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.661
3qfc FADNADPH--cytochrome P450 reductase / 0.661
1tdk FADL-amino-acid oxidase 1.4.3.2 0.660
2gpj FADSiderophore-interacting protein / 0.660
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.659
1tdo FADL-amino-acid oxidase 1.4.3.2 0.659
1tll FADNitric oxide synthase, brain 1.14.13.39 0.659
2hq9 FADMll6688 protein / 0.659
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.659
3bnk FMNFlavoredoxin / 0.658
3all FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.657
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.656
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.655
3r5z F42Uncharacterized protein / 0.655
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.653
1t6z RBFRiboflavin biosynthesis protein / 0.653
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.652
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.652
1v5e FADPyruvate oxidase / 0.652
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.652
3fpk FADFerredoxin-NADP reductase / 0.652
4hj3 FMNLOV protein / 0.652
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.651
1usc FMNMonooxygenase / 0.651
2bf4 FADNADPH--cytochrome P450 reductase / 0.651
3fmw FADOxygenase / 0.651
3rh7 FMNUncharacterized protein / 0.651
3w5u FADFerredoxin / 0.651
1n07 FMNRiboflavin kinase 2.7.1.26 0.650
2bpo FADNADPH--cytochrome P450 reductase / 0.650
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.650
3in6 FMNUncharacterized protein / 0.650
5cho FADFlavin reductase / 0.650