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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3a20 FMN FMN-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3a20 FMNFMN-binding protein / 1.140
3a6r FMNFMN-binding protein / 1.040
3vy2 FMNFMN-binding protein / 1.037
3a6q FMNFMN-binding protein / 1.028
1wli FMNFMN-binding protein / 1.027
3awh FMNFMN-binding protein / 1.011
3vy5 FMNFMN-binding protein / 1.009
3amf FMNFMN-binding protein / 0.994
2e83 FMNFMN-binding protein / 0.991
1flm FMNFMN-binding protein / 0.990
1wlk FMNFMN-binding protein / 0.952
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.722
2vnh FADNADPH:ferredoxin reductase / 0.699
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.692
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.691
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.691
3qe2 FADNADPH--cytochrome P450 reductase / 0.689
3e4v FMNUncharacterized protein / 0.688
3qfc FADNADPH--cytochrome P450 reductase / 0.688
2vnk FADNADPH:ferredoxin reductase / 0.687
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.686
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.685
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.685
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.685
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.684
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.681
3qfs FADNADPH--cytochrome P450 reductase / 0.681
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.681
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.680
2vnj FADNADPH:ferredoxin reductase / 0.680
2dji FADPyruvate oxidase / 0.678
3crz FADFerredoxin--NADP+ reductase / 0.678
3ojw FADNADPH--cytochrome P450 reductase / 0.678
3r5y F42Uncharacterized protein / 0.678
2bn4 FADNADPH--cytochrome P450 reductase / 0.677
1amo FADNADPH--cytochrome P450 reductase / 0.675
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.675
2pia FMNPhthalate dioxygenase reductase / 0.675
2bgj FADNADPH:ferredoxin reductase / 0.673
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.672
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.671
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.670
1pkv RBFRiboflavin synthase 2.5.1.9 0.669
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.667
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.667
1usc FMNMonooxygenase / 0.666
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.666
2hq9 FADMll6688 protein / 0.666
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.665
1j9z FADNADPH--cytochrome P450 reductase / 0.665
4fk8 FADFerredoxin--NADP reductase / 0.665
1cqx FADFlavohemoprotein / 0.664
2bf4 FADNADPH--cytochrome P450 reductase / 0.664
4ttc FMNIodotyrosine deiodinase 1 / 0.664
3qft FADNADPH--cytochrome P450 reductase / 0.662
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.661
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.661
3pl8 FADPyranose 2-oxidase / 0.660
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.659
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.658
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.658
2rc5 FADFerredoxin--NADP reductase / 0.658
4yau FADNADPH--cytochrome P450 reductase / 0.658
1tll FADNitric oxide synthase, brain 1.14.13.39 0.657
4k2x FADPolyketide oxygenase/hydroxylase / 0.657
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.656
5cho FADFlavin reductase / 0.656
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.655
1que FADFerredoxin--NADP reductase 1.18.1.2 0.655
2o12 FMNChorismate synthase / 0.655
2ptf FMNUncharacterized protein MTH_863 / 0.655
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.654
1gaq FADFerredoxin / 0.654
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.654
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.654
4hj4 FMNLOV protein / 0.654
2bgi FADNADPH:ferredoxin reductase / 0.653
4y9u FADNADPH--cytochrome P450 reductase / 0.653
3vo2 FADFerredoxin--NADP reductase / 0.652
2rc6 FADFerredoxin--NADP reductase / 0.651
1v5e FADPyruvate oxidase / 0.650
4b4d FADFerredoxin-NADP reductase / 0.650