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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zx7 ZX7 Alpha-L-fucosidase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zx7 ZX7Alpha-L-fucosidase, putative / 1.079
2zx6 ZX6Alpha-L-fucosidase, putative / 1.012
2zx8 ZX8Alpha-L-fucosidase, putative / 0.991
2zx5 ZX5Alpha-L-fucosidase, putative / 0.930
2zx9 ZX9Alpha-L-fucosidase, putative / 0.897
3vil SA0Beta-glucosidase / 0.659
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.656