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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zu8 GDD Mannosyl-3-phosphoglycerate synthase 2.4.1.217

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zu8 GDDMannosyl-3-phosphoglycerate synthase 2.4.1.217 1.232
2wvm GDDMannosyl-3-phosphogylcerate synthase / 0.723
2bo8 GDXMannosylglycerate synthase / 0.686
2x60 GTPMannose-1-phosphate guanylyltransferase / 0.677
4y6u UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.657
5la6 GDPTubulin beta-2B chain / 0.654
2wvl GDDMannosyl-3-phosphogylcerate synthase / 0.652