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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ztm NAD D(-)-3-hydroxybutyrate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 1.243
3w8f NAD3-hydroxybutyrate dehydrogenase / 1.111
3w8d NAD3-hydroxybutyrate dehydrogenase / 1.091
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 1.081
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 1.026
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.968
2dte NAIGlucose 1-dehydrogenase related protein / 0.963
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.962
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.960
4yag NAIC alpha-dehydrogenase / 0.952
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.944
4b79 NADProbable short-chain dehydrogenase / 0.932
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.911
4kwh NAPReductase homolog / 0.909
4yai NAIC alpha-dehydrogenase / 0.909
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.903
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.901
3p19 NDPPutative blue fluorescent protein / 0.898
1x7h NDPPutative ketoacyl reductase 1.3.1 0.897
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.884
4bmv NAPShort-chain dehydrogenase / 0.883
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.877
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.876
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.874
3o26 NDPSalutaridine reductase / 0.873
4dbz NDPPutative ketoacyl reductase 1.3.1 0.869
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.865
3uce NDPDehydrogenase / 0.859
3ak4 NADNADH-dependent quinuclidinone reductase / 0.858
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.855
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.854
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.854
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.853
4j7u NAPSepiapterin reductase 1.1.1.153 0.852
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.850
4fn4 NADShort chain dehydrogenase / 0.848
2wsb NADGalactitol dehydrogenase / 0.843
5jla NADPutative short-chain dehydrogenase/reductase / 0.843
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.843
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.840
1pr9 NAPL-xylulose reductase 1.1.1.10 0.839
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.838
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.836
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.835
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.835
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.832
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.831
1x7g NAPPutative ketoacyl reductase 1.3.1 0.827
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.826
3d3w NAPL-xylulose reductase 1.1.1.10 0.822
3qrw NDPPutative ketoacyl reductase 1.3.1 0.822
4j7x NAPSepiapterin reductase 1.1.1.153 0.820
1w4z NAPPutative ketoacyl reductase 1.3.1 0.819
3tsc NADUncharacterized protein / 0.819
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.818
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.818
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.818
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.817
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.817
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.814
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.812
1oaa NAPSepiapterin reductase 1.1.1.153 0.811
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.809
3sx2 NADUncharacterized protein / 0.806
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.804
2bd0 NAPSepiapterin reductase / 0.803
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.802
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.802
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.801
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.801
1sny NAPLD36273p / 0.800
3tn7 NJPShort-chain alcohol dehydrogenase / 0.800
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.800
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.796
2jah NDPClavaldehyde dehydrogenase / 0.795
3ai3 NDPNADPH-sorbose reductase / 0.795
3geg NADShort-chain dehydrogenase/reductase SDR / 0.794
3s55 NADPutative short-chain dehydrogenase/reductase / 0.793
3wds NADNADH-dependent quinuclidinone reductase / 0.792
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.791
3l77 NJPShort-chain alcohol dehydrogenase / 0.791
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.787
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.786
1ipe NDPTropinone reductase 2 1.1.1.236 0.785
1zem NADXylitol dehydrogenase / 0.784
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.784
2yut NAPPutative short-chain oxidoreductase / 0.783
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.782
4hwk NAPSepiapterin reductase 1.1.1.153 0.780
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.777
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.777
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.775
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.775
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.773
3ai2 NDPNADPH-sorbose reductase / 0.772
2c29 NAPDihydroflavonol 4-reductase / 0.771
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.768
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.766
1vrw NAIEnoyl-ACP reductase / 0.765
4qec NAPElxO / 0.765
1ae1 NAPTropinone reductase 1 / 0.764
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.763
3r3s NADPutative oxidoreductase / 0.763
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.761
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.756
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.756
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.756
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.755
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.754
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.754
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.754
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.753
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.750
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.750
4clo NAPPteridine reductase / 0.750
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.749
3tox NAPPutative oxidoreductase / 0.748
4eso NAPPutative oxidoreductase / 0.748
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.747
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.745
5jyd NADShort chain dehydrogenase / 0.745
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.744
2yy7 NADL-threonine dehydrogenase / 0.741
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.739
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.739
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.739
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.738
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.737
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.737
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.735
3h4v NAPPteridine reductase 1 1.5.1.33 0.735
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.735
2p5y NADUDP-glucose 4-epimerase / 0.734
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.733
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.733
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.732
3u4c NDPNADPH-dependent reductase BacG / 0.732
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.732
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.728
2nq8 ZIDEnoyl-ACP reductase / 0.725
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.725
4o1m NADEnoyl-acyl carrier reductase / 0.725
5d2e NAPMlnE / 0.725
1iy8 NADLevodione reductase / 0.724
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.724
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.721
4qed NAPElxO / 0.721
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.720
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.719
3a4v NADNDP-sugar epimerase / 0.719
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.715
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.715
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.714
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.714
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.714
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.714
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.713
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.712
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.712
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.712
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.712
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.711
4u7w NDPMxaA / 0.711
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.710
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.710
3icp NADNAD-dependent epimerase/dehydratase / 0.710
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.710
3aw9 NADNAD-dependent epimerase/dehydratase / 0.709
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.709
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.707
2p5u NADUDP-glucose 4-epimerase / 0.707
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.707
2wdz NADGalactitol dehydrogenase / 0.706
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.705
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.704
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.703
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.703
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.701
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.700
3a9w NADNDP-sugar epimerase / 0.699
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.698
1sby NADAlcohol dehydrogenase 1.1.1.1 0.698
3bmo NAPPteridine reductase / 0.698
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.697
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.696
3sju NDPKeto reductase / 0.696
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.694
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.692
3ajr NADNDP-sugar epimerase / 0.691
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
3mje NDPAmphB / 0.689
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.687
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.684
4y9d NAIC alpha-dehydrogenase / 0.683
4hxy NDPPlm1 / 0.682
4egb NADdTDP-glucose 4,6-dehydratase / 0.681
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.680
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.679
1xkq NDPUncharacterized protein / 0.678
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.678
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.678
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.676
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.676
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.676
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.675
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.673
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.672
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.672
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.672
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.671
5lc1 NADL-threonine 3-dehydrogenase / 0.671
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.670
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.668
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.668
2cvz NDP3-hydroxyisobutyrate dehydrogenase / 0.666
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.666
1v35 NAIEnoyl-ACP reductase / 0.665
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.665
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.664
2rcy NAPPyrroline-5-carboxylate reductase / 0.663
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.662
4idg NADPutative UDP-glucose 4-epimerase / 0.662
4qxm NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
4ros APRMalate dehydrogenase / 0.662
1ek5 NADUDP-glucose 4-epimerase / 0.660
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.660
2y05 NAPProstaglandin reductase 1 / 0.660
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.660
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.660
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
4b4o NDPEpimerase family protein SDR39U1 / 0.659
2c0c NAPProstaglandin reductase 3 1 0.657
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.657
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.657
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.656
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.655
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.654
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.654
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.654
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
2bja NAD1-pyrroline-5-carboxylate dehydrogenase / 0.652
4wec NADShort chain dehydrogenase / 0.652
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.651
3ras NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.651
1cg3 IMOAdenylosuccinate synthetase / 0.650
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.650
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.650
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.650
4m55 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.650