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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zt7 ATP Glycine--tRNA ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zt7 ATPGlycine--tRNA ligase / 1.072
2zt5 B4PGlycine--tRNA ligase / 0.764
3mey ATPAmino acid--[acyl-carrier-protein] ligase 1 6.2.1.n2 0.723
4bw9 ANPPyrrolysine--tRNA ligase / 0.683
3bju ATPLysine--tRNA ligase 6.1.1.6 0.681
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.658
3pzc GAPAmino acid--[acyl-carrier-protein] ligase 1 6.2.1.n2 0.656
4xeo A5AAlanine--tRNA ligase, cytoplasmic / 0.656
2ydo ADNAdenosine receptor A2a / 0.651