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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zsc BTN Tamavidin2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zsc BTNTamavidin2 / 1.034
3ry2 BTNStreptavidin / 0.986
2y3f BTNStreptavidin / 0.979
3wyq BTNStreptavidin / 0.979
2izf BTNStreptavidin / 0.977
3wyp BSOStreptavidin / 0.976
4gd9 BTNStreptavidin / 0.975
4gda BTNStreptavidin / 0.971
2izh BTNStreptavidin / 0.969
1mk5 BTNStreptavidin / 0.954
1n43 BTNStreptavidin / 0.949
2rtg BTNStreptavidin / 0.944
1luq BTNStreptavidin / 0.943
2rtf BTNStreptavidin / 0.943
4yvb BTNStreptavidin / 0.940
2izg BTNStreptavidin / 0.933
1n9m BTNStreptavidin / 0.932
2rtd BTNStreptavidin / 0.932
4z28 BTNHoefavidin / 0.930
1swg BTNStreptavidin / 0.925
1swe BTNStreptavidin / 0.917
3wzn BTNStreptavidin / 0.911
4dne DTBStreptavidin / 0.911
1rxj BNIStreptavidin / 0.909
3rdo BTNStreptavidin / 0.908
2izi BTNStreptavidin / 0.904
1i9h BNIStreptavidin / 0.901
2rte BTNStreptavidin / 0.896
1ndj BTNStreptavidin / 0.894
1df8 BTNStreptavidin / 0.890
1lcw SHMStreptavidin / 0.889
2izj BTNStreptavidin / 0.887
1stp BTNStreptavidin / 0.884
3ew2 BTNHypothetical conserved protein / 0.884
1swr BTNStreptavidin / 0.883
1mep BTNStreptavidin / 0.880
4bx7 B4FStreptavidin / 0.874
2uyw BTNAvd protein / 0.873
1rxh BNIStreptavidin / 0.869
3rdq DTBStreptavidin / 0.859
1y52 BTNAvidin-related protein 4/5 / 0.857
3t2w BTNAvidin/streptavidin / 0.848
1swt BTNStreptavidin / 0.839
2fhl BNIAvidin-related protein 4/5 / 0.830
2rtm IMIStreptavidin / 0.829
4bcs BTNAvidin-related protein 4/5 / 0.826
4bj8 BTNAvidin / 0.826
2rtp IMIStreptavidin / 0.825
2fhn BNIAvidin-related protein 4/5 / 0.823
1swn BTNStreptavidin / 0.821
1nqm BTNStreptavidin / 0.816
2izl IMIStreptavidin / 0.814
2rtq IMIStreptavidin / 0.808
2rtr IMIStreptavidin / 0.808
1swp BTQStreptavidin / 0.799
2rto IMIStreptavidin / 0.793
1nc9 IMIStreptavidin / 0.788
1swd BTNStreptavidin / 0.780
3vhi VHIAvidin / 0.767
1swp BTNStreptavidin / 0.763
2jgs BTNAvidin / 0.758
4ggz BTNBll1558 protein / 0.757
2c4i BTNAvidin / 0.733
2rtl IMIStreptavidin / 0.723
2rtn IMIStreptavidin / 0.723
2avi BTNAvidin / 0.722
1avd BTNAvidin / 0.698
2rti GLLStreptavidin / 0.688
2uz2 BTNAvd protein / 0.687
3vhh VHHAvidin / 0.683
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.666
3vhm NPKAvidin / 0.659
2om9 AJAPeroxisome proliferator-activated receptor gamma / 0.655
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 0.653