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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zmd 537 Dual specificity protein kinase TTK 2.7.12.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zmd 537Dual specificity protein kinase TTK 2.7.12.1 0.851
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2jdv L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.673
2hxl 422Serine/threonine-protein kinase Chk1 2.7.11.1 0.669
4e5l DBHPolymerase acidic protein / 0.664
4e5f 0N7Polymerase acidic protein / 0.660
4bi1 ZO6Dual specificity protein kinase TTK 2.7.12.1 0.657
3v8s 0HDRho-associated protein kinase 1 2.7.11.1 0.655
3w1f 1O5Dual specificity protein kinase TTK 2.7.12.1 0.652
2ye4 2FYHeat shock protein HSP 90-alpha / 0.650