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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zla VDB Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zla VDBVitamin D3 receptor / 1.652
2zl9 VDAVitamin D3 receptor / 1.435
3vt6 5YIVitamin D3 receptor / 1.219
3vt5 YI2Vitamin D3 receptor / 1.216
3vrv YSDVitamin D3 receptor / 1.206
3vt4 5YIVitamin D3 receptor / 1.126
3vt8 YI3Vitamin D3 receptor / 1.103
2zlc VDXVitamin D3 receptor / 1.077
3vru YS3Vitamin D3 receptor / 1.077
3vt9 YI4Vitamin D3 receptor / 1.077
2o4r VD5Vitamin D3 receptor / 1.054
3vrw YS5Vitamin D3 receptor / 1.027
1rkh VD2Vitamin D3 receptor / 1.020
1s19 MC9Vitamin D3 receptor / 1.006
2har OCCVitamin D3 receptor / 0.991
1rkg VD1Vitamin D3 receptor / 0.989
4ruj VDXVitamin D3 receptor A / 0.942
1rk3 VDXVitamin D3 receptor / 0.923
4ia3 BIVVitamin D3 receptor A / 0.923
2has C3OVitamin D3 receptor / 0.905
2o4j VD4Vitamin D3 receptor / 0.902
2hb8 MVDVitamin D3 receptor / 0.899
4ia7 BIVVitamin D3 receptor A / 0.891
2hb7 O1CVitamin D3 receptor / 0.884
3vt7 VDXVitamin D3 receptor / 0.881
3kpz ZNEVitamin D3 receptor / 0.877
1db1 VDXVitamin D3 receptor / 0.875
3m7r VDXVitamin D3 receptor / 0.855
2ham C33Vitamin D3 receptor / 0.854
4ia1 BIVVitamin D3 receptor A / 0.854
2hbh XE4Vitamin D3 receptor A / 0.842
4itf TFYVitamin D3 receptor / 0.842
3vrt YS2Vitamin D3 receptor / 0.828
2hc4 VDXVitamin D3 receptor A / 0.820
3vtd TKDVitamin D3 receptor / 0.802
4ia2 BIVVitamin D3 receptor A / 0.800
1ie9 VDXVitamin D3 receptor / 0.769
4ite TEYVitamin D3 receptor / 0.764
3a78 3EVVitamin D3 receptor / 0.735
3w0j T08Vitamin D3 receptor / 0.733
1s0z EB1Vitamin D3 receptor / 0.730
1txi TX5Vitamin D3 receptor / 0.724
3vt3 VDXVitamin D3 receptor / 0.722
1ie8 KH1Vitamin D3 receptor / 0.713
3dr1 C5DVitamin D3 receptor A / 0.711
4fhh 0U3Vitamin D3 receptor A / 0.687
4fhi 0S4Vitamin D3 receptor A / 0.671
3w0h W12Vitamin D3 receptor / 0.662
4ruo BIVVitamin D3 receptor A / 0.656
3rin I2OMitogen-activated protein kinase 14 / 0.654