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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zl9 VDA Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zl9 VDAVitamin D3 receptor / 1.738
2zla VDBVitamin D3 receptor / 1.435
3vt5 YI2Vitamin D3 receptor / 1.313
3vrv YSDVitamin D3 receptor / 1.303
3vt6 5YIVitamin D3 receptor / 1.284
3vru YS3Vitamin D3 receptor / 1.191
2zlc VDXVitamin D3 receptor / 1.175
1rkh VD2Vitamin D3 receptor / 1.161
3vt8 YI3Vitamin D3 receptor / 1.161
2o4r VD5Vitamin D3 receptor / 1.155
3vt3 VDXVitamin D3 receptor / 1.132
3vt4 5YIVitamin D3 receptor / 1.114
2har OCCVitamin D3 receptor / 1.089
3vt9 YI4Vitamin D3 receptor / 1.082
1s19 MC9Vitamin D3 receptor / 1.076
1rk3 VDXVitamin D3 receptor / 1.058
1txi TX5Vitamin D3 receptor / 1.057
2hb7 O1CVitamin D3 receptor / 1.056
1rkg VD1Vitamin D3 receptor / 1.054
2has C3OVitamin D3 receptor / 1.051
3vt7 VDXVitamin D3 receptor / 1.032
1db1 VDXVitamin D3 receptor / 1.019
3vrw YS5Vitamin D3 receptor / 1.007
2o4j VD4Vitamin D3 receptor / 1.006
4itf TFYVitamin D3 receptor / 1.000
4ia3 BIVVitamin D3 receptor A / 0.995
2hc4 VDXVitamin D3 receptor A / 0.994
2ham C33Vitamin D3 receptor / 0.969
3m7r VDXVitamin D3 receptor / 0.964
2hb8 MVDVitamin D3 receptor / 0.962
4ruj VDXVitamin D3 receptor A / 0.944
3kpz ZNEVitamin D3 receptor / 0.927
4ia7 BIVVitamin D3 receptor A / 0.906
4ia1 BIVVitamin D3 receptor A / 0.902
4ia2 BIVVitamin D3 receptor A / 0.868
3vtb TKAVitamin D3 receptor / 0.864
3a78 3EVVitamin D3 receptor / 0.830
1rjk VDZVitamin D3 receptor / 0.826
4ite TEYVitamin D3 receptor / 0.825
1s0z EB1Vitamin D3 receptor / 0.814
3vtc TK3Vitamin D3 receptor / 0.795
1ie9 VDXVitamin D3 receptor / 0.788
3w0j T08Vitamin D3 receptor / 0.774
4fhi 0S4Vitamin D3 receptor A / 0.767
4ruo BIVVitamin D3 receptor A / 0.740
2hbh XE4Vitamin D3 receptor A / 0.738
4rw6 494Gag-Pol polyprotein 2.7.7.49 0.664
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.660
3ka0 MK3MAP kinase-activated protein kinase 2 2.7.11.1 0.656
4a80 2ANMajor pollen allergen Bet v 1-A / 0.656
1foa UD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 0.655