Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zh6 ATP CCA-adding enzyme 2.7.7.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zh6 ATPCCA-adding enzyme 2.7.7.72 0.976
2dra ATPCCA-adding enzyme 2.7.7.72 0.871
3ova APCCCA-adding enzyme 2.7.7.72 0.840
3ovb ATPCCA-adding enzyme 2.7.7.72 0.760
3ov7 ATPCCA-adding enzyme 2.7.7.72 0.716
1r89 CTPCCA-adding enzyme 2.7.7.72 0.687
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.685
2q66 ATPPoly(A) polymerase 2.7.7.19 0.678
3ovs CTPCCA-adding enzyme 2.7.7.72 0.675
3hiy UTPUncharacterized protein / 0.668
2dr8 CTPCCA-adding enzyme 2.7.7.72 0.666
2b51 UTPRNA editing complex protein MP57 / 0.662