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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zaf FAD Nitroalkane oxidase 1.7.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zaf FADNitroalkane oxidase 1.7.3.1 1.740
3fcj FADNitroalkane oxidase 1.7.3.1 1.491
2c12 FADNitroalkane oxidase 1.7.3.1 1.465
2reh FADNitroalkane oxidase 1.7.3.1 1.378
3mkh FADNitroalkane oxidase / 1.338
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.801
2fon FADAcyl-coenzyme A oxidase / 0.741
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.740
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.720
4eet FMNPhototropin-2 2.7.11.1 0.707
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.696
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.696
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.695
2hqm FADGlutathione reductase 1.8.1.7 0.693
2z1q FADAcyl-CoA dehydrogenase / 0.689
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.688
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.687
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.683
1ger FADGlutathione reductase 1.8.1.7 0.679
2dvl FADAcyl-CoA dehydrogenase / 0.679
4mih FADPyranose 2-oxidase 1.1.3.10 0.677
2e77 FMNLactate oxidase / 0.675
2jk6 FADTrypanothione reductase / 0.675
3axb FADPutative oxidoreductase / 0.675
4eep FMNPhototropin-2 2.7.11.1 0.675
3f6r FMNFlavodoxin / 0.674
2fja FADAdenylylsulfate reductase, subunit A (AprA) / 0.673
3d72 FADVivid PAS protein VVD / 0.673
3eo8 FMNPutative nitroreductase / 0.673
4hia FMNLOV protein / 0.673
2igo FADPyranose 2-oxidase / 0.672
3k4n FADPyranose 2-oxidase / 0.671
2iid FADL-amino-acid oxidase 1.4.3.2 0.668
3dgh FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.667
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.665
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.665
2pg0 FADAcyl-CoA dehydrogenase / 0.665
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.665
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.664
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.664
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.663
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.660
5efw FMNNPH1-1 / 0.660
3haz FADBifunctional protein PutA / 0.659
4rsl FADFructosyl peptide oxidase / 0.659
2dw4 FADLysine-specific histone demethylase 1A 1 0.656
3bi5 FADPolyamine oxidase FMS1 / 0.656
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.654
1cl0 FADThioredoxin reductase 1.8.1.9 0.653
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.653
1gal FADGlucose oxidase 1.1.3.4 0.652
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.652
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.652
4hj4 FMNLOV protein / 0.652
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.651
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651