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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2z86 UGA Chondroitin synthase 2.4.1.175

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2z86 UGAChondroitin synthase 2.4.1.175 1.123
1kws UGAGalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 / 0.674
3i9j AVVADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.669
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.665
4fr8 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.659
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.659
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.657