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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2z78 H86 Geranylgeranyl pyrophosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2z78 H86Geranylgeranyl pyrophosphate synthase / 1.376
2zev B71Geranylgeranyl pyrophosphate synthase / 0.716
4fvq ATPTyrosine-protein kinase JAK2 / 0.663
2z4w 749Geranylgeranyl pyrophosphate synthase / 0.658
4hut ATPCob(I)yrinic acid a,c-diamide adenosyltransferase 2.5.1.17 0.654
1ytm ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.651
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.650