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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2z6r SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2z6r SAHDiphthine synthase / 1.088
2ehl SAHDiphthine synthase / 1.085
2dxw SAHDiphthine synthase / 1.084
2e07 SAHDiphthine synthase / 1.084
2e7r SAHDiphthine synthase / 1.084
2egb SAHDiphthine synthase / 1.083
2e15 SAHDiphthine synthase / 1.081
2egl SAHDiphthine synthase / 1.081
2dek SAHDiphthine synthase / 1.080
2el0 SAHDiphthine synthase / 1.077
2owk SAHDiphthine synthase / 1.077
2owu SAHDiphthine synthase / 1.073
2dxv SAHDiphthine synthase / 1.065
2e4n SAHDiphthine synthase / 1.065
2eh2 SAHDiphthine synthase / 1.065
2dxx SAHDiphthine synthase / 1.064
2ejj SAHDiphthine synthase / 1.063
2ek7 SAHDiphthine synthase / 1.063
2ele SAHDiphthine synthase / 1.063
2p9d SAHDiphthine synthase / 1.063
2dsg SAHDiphthine synthase / 1.062
2dsh SAHDiphthine synthase / 1.062
2e08 SAHDiphthine synthase / 1.062
2e17 SAHDiphthine synthase / 1.062
2eni SAHDiphthine synthase / 1.061
2p6i SAHDiphthine synthase / 1.061
2p6l SAHDiphthine synthase / 1.061
2pcm SAHDiphthine synthase / 1.061
2e16 SAHDiphthine synthase / 1.060
2eh4 SAHDiphthine synthase / 1.060
2en5 SAHDiphthine synthase / 1.060
2p6k SAHDiphthine synthase / 1.060
2ed5 SAHDiphthine synthase / 1.059
2egs SAHDiphthine synthase / 1.059
2pb5 SAHDiphthine synthase / 1.059
2pck SAHDiphthine synthase / 1.059
2dv3 SAHDiphthine synthase / 1.058
2ek4 SAHDiphthine synthase / 1.058
2emr SAHDiphthine synthase / 1.058
2pca SAHDiphthine synthase / 1.058
2pcg SAHDiphthine synthase / 1.058
2e8r SAHDiphthine synthase / 1.057
2e8s SAHDiphthine synthase / 1.057
2ek2 SAHDiphthine synthase / 1.057
2ek3 SAHDiphthine synthase / 1.057
2eka SAHDiphthine synthase / 1.057
2p5f SAHDiphthine synthase / 1.057
1wng SAHDiphthine synthase / 1.056
2eh5 SAHDiphthine synthase / 1.056
2el3 SAHDiphthine synthase / 1.056
2huq SAHDiphthine synthase / 1.056
2hut SAHDiphthine synthase / 1.056
2huv SAHDiphthine synthase / 1.056
2eeq SAHDiphthine synthase / 1.054
2dv7 SAHDiphthine synthase / 1.047
2p6d SAHDiphthine synthase / 1.047
2ejk SAHDiphthine synthase / 1.040
2pch SAHDiphthine synthase / 1.040
2pb6 SAHDiphthine synthase / 1.039
2dv5 SAHDiphthine synthase / 1.038
2e8h SAHDiphthine synthase / 1.038
2owg SAHDiphthine synthase / 1.037
2eld SAHDiphthine synthase / 1.027
2p2x SAHDiphthine synthase / 1.027
2dv4 SAHDiphthine synthase / 1.024
2pci SAHDiphthine synthase / 1.024
2emu SAHDiphthine synthase / 1.023
2e8q SAHDiphthine synthase / 1.022
2owv SAHDiphthine synthase / 1.018
2p5c SAHDiphthine synthase / 1.017
1vce SAHDiphthine synthase / 1.004
2pb4 SAHDiphthine synthase / 1.003
2dsi SAHDiphthine synthase / 0.992
2hux SAHDiphthine synthase / 0.929
2hr8 SAHDiphthine synthase / 0.875
2ejz SAHDiphthine synthase / 0.815
2ed3 SAHDiphthine synthase / 0.741
4l2i FADElectron transfer flavoprotein alpha/beta-subunit / 0.699
2owf SAHDiphthine synthase / 0.697
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.692
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.690
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.681
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.680
3s3t ATPUniversal stress protein / 0.675
2qbu SAHPrecorrin-2 methyltransferase / 0.674
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.672
4cnf MTASpoU rRNA methylase / 0.670
1kh2 ATPArgininosuccinate synthase / 0.665
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.664
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.664
3nut SAHPrecorrin-3 methylase / 0.661
4cng SAHSpoU rRNA methylase / 0.661
4hpt ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.660
1kor ANPArgininosuccinate synthase / 0.659
4jl8 ADPAdenylate kinase / 0.659
1mb9 ATPCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.658
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.656
4i0b CMPcAMP-activated global transcriptional regulator CRP / 0.655
1i44 ACPInsulin receptor 2.7.10.1 0.654
2zvb SAHPrecorrin-3 C17-methyltransferase / 0.654
4qny ANPMitogen activated protein kinase, putative / 0.654
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.653
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.653
2bb3 SAHCobalamin biosynthesis precorrin-6Y methylase (CbiE) / 0.651
1jbp ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.650
2ha8 SAHProbable methyltransferase TARBP1 / 0.650
5jhn SAMHistone-lysine N-methyltransferase EHMT2 / 0.650