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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2z4y 252 Geranylgeranyl pyrophosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2z4y 252Geranylgeranyl pyrophosphate synthase / 1.081
2z4w 749Geranylgeranyl pyrophosphate synthase / 0.760
2z52 H23Geranylgeranyl pyrophosphate synthase / 0.739
2e91 ZOLGeranylgeranyl pyrophosphate synthase / 0.731
4h5c YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.717
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.712
4lfv YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.706
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.689
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.686
4h5d YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.685
2z50 028Geranylgeranyl pyrophosphate synthase / 0.679
2o1o RISPutative farnesyl pyrophosphate synthase / 0.675
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.670
2f94 BFQFarnesyl pyrophosphate synthase 2.5.1.10 0.668
3dyh 721Farnesyl pyrophosphate synthase / 0.665
3rbm B73Farnesyl pyrophosphate synthase, putative / 0.655