Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yxu ATP Pyridoxal kinase 2.7.1.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yxu ATPPyridoxal kinase 2.7.1.35 0.987
3keu ATPPyridoxal kinase 2.7.1.35 0.877
4en4 ATPPyridoxal kinase 2.7.1.35 0.868
3fhy ATPPyridoxal kinase 2.7.1.35 0.743
4s1h ADPPyridoxal kinase, putative / 0.665
4ko8 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.652