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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yq9 2AM 2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yq9 2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.922
3zbz OVE2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.756
3zbs OVE2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.734
4wda 2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.699
4wdf A2P2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.680
2yoz OVE2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.677
4wdg A2P2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.675
4qak 2AMRNA 2',3'-cyclic phosphodiesterase / 0.667