Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yoz OVE 2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yoz OVE2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.824
3zbz OVE2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.750
3zbs OVE2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.741
4wdb 2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.735
4wdg A2P2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.684
2yq9 2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.677
4qak 2AMRNA 2',3'-cyclic phosphodiesterase / 0.676
4wda 2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.671
4wdf A2P2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 0.668
4bls APCNTPase P4 / 0.654