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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yne NHW Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.782
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.731
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.718
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.699
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.685
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.675
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.674
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.659
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.657
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.656
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.566
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.550
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.550
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.537
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.530
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.528
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.526
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.517
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.508
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.507
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.507
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.500
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.475
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.448
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.443
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.433
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.379
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.344
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.144
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.046
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.043
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.961
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.852
5kf8 COAPredicted acetyltransferase / 0.703
2bsw CAOProbable acetyltransferase / 0.664
1t7f DHTAndrogen receptor / 0.663
3t31 DCQSulfide-quinone reductase / 0.662
2piu DHTAndrogen receptor / 0.653
2zsc BTNTamavidin2 / 0.653
3ew2 BTNHypothetical conserved protein / 0.652
1n9m BTNStreptavidin / 0.651
4bx7 B4FStreptavidin / 0.651
2fhl BNIAvidin-related protein 4/5 / 0.650
4oez DHTAndrogen receptor / 0.650