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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ync YNC Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.789
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.664
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.664
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.657
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.657
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.633
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.619
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.615
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.599
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.575
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.554
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.543
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.541
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.533
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.523
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.506
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.492
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.470
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.452
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.443
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.433
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.428
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.419
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.405
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.399
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.365
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.333
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.245
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.092
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.061
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.054
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.975
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.900
1cjw COTSerotonin N-acetyltransferase / 0.715
3r95 ACOMccE protein / 0.710
3wzn BTNStreptavidin / 0.658
1sqv UHDCytochrome b / 0.657
1xvt COAL-carnitine CoA-transferase / 0.656
3exn ACOProbable acetyltransferase / 0.654
1luq BTNStreptavidin / 0.650
2izi BTNStreptavidin / 0.650
2rc6 FADFerredoxin--NADP reductase / 0.650