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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yki YKI Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yki YKIHeat shock protein HSP 90-alpha / 1.178
2ykj YKJHeat shock protein HSP 90-alpha / 1.097
2ykb YKBHeat shock protein HSP 90-alpha / 1.054
2ykc YKCHeat shock protein HSP 90-alpha / 1.035
2yke YKEHeat shock protein HSP 90-alpha / 0.989
2yjx YJXHeat shock protein HSP 90-alpha / 0.851
2yk2 YJXHeat shock protein HSP 90-alpha / 0.826
1uy8 PU5Heat shock protein HSP 90-alpha / 0.659
4fsm HK1Serine/threonine-protein kinase Chk1 2.7.11.1 0.659
2qg2 A91Heat shock protein HSP 90-alpha / 0.658
4f9m FCMPeroxisome proliferator-activated receptor gamma / 0.650