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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yem WSH Bromodomain-containing protein 4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yem WSHBromodomain-containing protein 4 / 0.981
2yel WSHBromodomain-containing protein 4 / 0.824
4lrg 1XBBromodomain-containing protein 4 / 0.759
2ydw WSHBromodomain-containing protein 2 / 0.758
4f3i 0S6Bromodomain-containing protein 4 / 0.740
4qzs JQ1Bromodomain-containing protein 4 / 0.721
4c66 H4CBromodomain-containing protein 4 / 0.707
4c67 L5SBromodomain-containing protein 4 / 0.679
4mr5 1K0Bromodomain-containing protein 2 / 0.675
5dfc EAMBromodomain-containing protein 2 / 0.674
5bt5 2LOBromodomain-containing protein 2 / 0.665
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4gpj 0Q1Bromodomain-containing protein 4 / 0.652