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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ycm 30A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2.7.7.60

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ycm 30A2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2.7.7.60 1.008
4f9y GG5Mitogen-activated protein kinase 14 / 0.653
3c4e C4ESerine/threonine-protein kinase pim-1 2.7.11.1 0.651
3hll I46Mitogen-activated protein kinase 14 / 0.650