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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ya3 J7V 5'-AMP-activated protein kinase subunit gamma-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ya3 J7V5'-AMP-activated protein kinase subunit gamma-1 / 1.250
2y8l ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.878
2y8q ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.808
2v9j ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.774
3lfz ADPUncharacterized protein MJ1225 / 0.691
2j9l ATPH(+)/Cl(-) exchange transporter 5 / 0.669
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.654
1xjn DTPVitamin B12-dependent ribonucleotide reductase / 0.651