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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2y82 930 Coagulation factor X 3.4.21.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2y82 930Coagulation factor X 3.4.21.6 0.900
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
2j34 GS6Coagulation factor X 3.4.21.6 0.713
1iqg XMECoagulation factor X 3.4.21.6 0.678
1iqe XMBCoagulation factor X 3.4.21.6 0.676
2vh0 GSICoagulation factor X 3.4.21.6 0.669
2vwm LZICoagulation factor X 3.4.21.6 0.664
1sl3 170Prothrombin 3.4.21.5 0.663
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1k22 MELProthrombin 3.4.21.5 0.658
4bah MELProthrombin 3.4.21.5 0.658
4ban M6SProthrombin 3.4.21.5 0.658
4e7r 0NWProthrombin 3.4.21.5 0.657
1iqh XMFCoagulation factor X 3.4.21.6 0.656
1z71 L17Prothrombin 3.4.21.5 0.656
4bam MM9Prothrombin 3.4.21.5 0.655
2g00 4QCCoagulation factor X 3.4.21.6 0.654