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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2y3f BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2y3f BTNStreptavidin / 1.050
2izf BTNStreptavidin / 1.046
3ry2 BTNStreptavidin / 1.045
3wyq BTNStreptavidin / 1.044
1mk5 BTNStreptavidin / 1.039
2izh BTNStreptavidin / 1.028
2rtg BTNStreptavidin / 1.021
1nqm BTNStreptavidin / 1.016
3wyp BSOStreptavidin / 1.015
2izi BTNStreptavidin / 1.013
2izg BTNStreptavidin / 1.010
4gda BTNStreptavidin / 1.010
2izj BTNStreptavidin / 0.997
1luq BTNStreptavidin / 0.990
2rtd BTNStreptavidin / 0.990
2rtf BTNStreptavidin / 0.990
3wzn BTNStreptavidin / 0.986
2rte BTNStreptavidin / 0.983
4yvb BTNStreptavidin / 0.983
1i9h BNIStreptavidin / 0.981
1n9m BTNStreptavidin / 0.981
2zsc BTNTamavidin2 / 0.979
1n43 BTNStreptavidin / 0.977
4dne DTBStreptavidin / 0.974
3rdo BTNStreptavidin / 0.971
4gd9 BTNStreptavidin / 0.971
1swe BTNStreptavidin / 0.970
1df8 BTNStreptavidin / 0.968
4bx7 B4FStreptavidin / 0.953
3rdq DTBStreptavidin / 0.942
1mep BTNStreptavidin / 0.924
3ew2 BTNHypothetical conserved protein / 0.916
1swr BTNStreptavidin / 0.915
2uyw BTNAvd protein / 0.915
1stp BTNStreptavidin / 0.914
1swg BTNStreptavidin / 0.911
1lcw SHMStreptavidin / 0.905
2izl IMIStreptavidin / 0.901
4z28 BTNHoefavidin / 0.901
1ndj BTNStreptavidin / 0.895
1rxj BNIStreptavidin / 0.891
1swt BTNStreptavidin / 0.885
1y52 BTNAvidin-related protein 4/5 / 0.883
2fhl BNIAvidin-related protein 4/5 / 0.880
2fhn BNIAvidin-related protein 4/5 / 0.878
1swn BTNStreptavidin / 0.877
4bcs BTNAvidin-related protein 4/5 / 0.869
2rtp IMIStreptavidin / 0.868
1lcz BH7Streptavidin / 0.866
1nc9 IMIStreptavidin / 0.862
1swp BTNStreptavidin / 0.855
2rtm IMIStreptavidin / 0.844
4bj8 BTNAvidin / 0.820
2c4i BTNAvidin / 0.804
3vhi VHIAvidin / 0.801
2rtn IMIStreptavidin / 0.800
2rtq IMIStreptavidin / 0.799
1swd BTNStreptavidin / 0.791
3vgw NVZAvidin / 0.788
2rtl IMIStreptavidin / 0.775
2jgs BTNAvidin / 0.766
1ij8 BNIAvidin / 0.752
1avd BTNAvidin / 0.728
1rxh BNIStreptavidin / 0.711
3vhm NPKAvidin / 0.703
4ggz BTNBll1558 protein / 0.700
1ldq SHMAvidin / 0.664
2avi BTNAvidin / 0.655
2rto IMIStreptavidin / 0.651