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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2y03 5FW Beta-1 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2y03 5FWBeta-1 adrenergic receptor / 0.981
4ldl XQCBeta-2 adrenergic receptor / 0.811
2y02 WHJBeta-1 adrenergic receptor / 0.810
2y04 68HBeta-1 adrenergic receptor / 0.805
2ycy P32Beta-1 adrenergic receptor / 0.772
2y01 Y00Beta-1 adrenergic receptor / 0.764
4lde P0GBeta-2 adrenergic receptor / 0.762
2vt4 P32Beta-1 adrenergic receptor / 0.749
3nya JTZBeta-2 adrenergic receptor / 0.748
3d4s TIMBeta-2 adrenergic receptor / 0.731
3p0g P0GBeta-2 adrenergic receptor / 0.722
2ycw CAUBeta-1 adrenergic receptor / 0.718
5jqh CAUBeta-2 adrenergic receptor / 0.718
5a8e XTKBeta-1 adrenergic receptor / 0.709
3ny9 JSZBeta-2 adrenergic receptor / 0.709
3sn6 P0GBeta-2 adrenergic receptor / 0.670
2ycz I32Beta-1 adrenergic receptor / 0.663
3ny8 JRZBeta-2 adrenergic receptor / 0.661
4ami G90Beta-1 adrenergic receptor / 0.657
5d5a CAUBeta-2 adrenergic receptor / 0.652