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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xxy KAI Glutamate receptor ionotropic, kainate 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 1.036
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 1.001
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.960
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.941
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.845
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.838
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.824
4f31 KAIGlutamate receptor 3 / 0.815
1lbb KAIGlutamate receptor 2 / 0.807
4f3g KAIGlutamate receptor 3 / 0.789
1fw0 KAIGlutamate receptor 2 / 0.788
3kfm KAIGlutamate receptor 4 / 0.777
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.759
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.745
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.720
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.718
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.716
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.715
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.689
5bp9 SAHPutative methyltransferase protein / 0.675
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.674
4gxs 0YSGlutamate receptor 2 / 0.674
3h03 UBPGlutamate receptor 2 / 0.669
1hb3 SCVIsopenicillin N synthase 1.21.3.1 0.660
2h00 SAHU6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase / 0.659
3lcu SAH16S rRNA (guanine(1405)-N(7))-methyltransferase 2.1.1.179 0.654