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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xxv KAI Glutamate receptor ionotropic, kainate 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 1.093
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 1.088
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.957
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.941
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.919
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.918
4f31 KAIGlutamate receptor 3 / 0.917
3kfm KAIGlutamate receptor 4 / 0.915
1lbb KAIGlutamate receptor 2 / 0.912
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.908
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.896
4f3g KAIGlutamate receptor 3 / 0.886
1fw0 KAIGlutamate receptor 2 / 0.859
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.766
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.704
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.703
4gxs 0YSGlutamate receptor 2 / 0.699
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.687
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.676
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.670
3rt8 CWDGlutamate receptor 3 / 0.668
3hf8 ML0Tryptophan 5-hydroxylase 1 1.14.16.4 0.662
5bp9 SAHPutative methyltransferase protein / 0.662
3vp6 HLDGlutamate decarboxylase 1 4.1.1.15 0.659
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 0.655
3lcu SAH16S rRNA (guanine(1405)-N(7))-methyltransferase 2.1.1.179 0.650