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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xwe AMF Glucosylceramidase 3.2.1.45

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xwe AMFGlucosylceramidase 3.2.1.45 1.221
2wcg MT5Glucosylceramidase 3.2.1.45 0.883
2wbg LGSBeta-glucosidase A 3.2.1.21 0.763
2j7d GI1Beta-glucosidase A 3.2.1.21 0.749
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.728
3gxf IFMGlucosylceramidase 3.2.1.45 0.723
3vil SA0Beta-glucosidase / 0.704
3ptq NFGBeta-glucosidase 12 / 0.703
3ai0 PNWBeta-glucosidase / 0.701
2j7c IDEBeta-glucosidase A 3.2.1.21 0.698
4f79 P53Putative phospho-beta-glucosidase / 0.695
2xpk Z0MO-GlcNAcase NagJ / 0.673
3zj6 VM2Raucaffricine-O-beta-D-glucosidase 3.2.1.125 0.672
3zj7 C1KStrictosidine-O-beta-D-glucosidase 3.2.1.105 0.671
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.664
3u5y SCGRaucaffricine-O-beta-D-glucosidase 3.2.1.125 0.663
4gnc ASORegucalcin 3.1.1.17 0.653
5auw QUEDeath-associated protein kinase 1 2.7.11.1 0.650