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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xuq TZ4 Acetylcholinesterase 3.1.1.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xuq TZ4Acetylcholinesterase 3.1.1.7 1.130
2xuo TZ4Acetylcholinesterase 3.1.1.7 0.818
2xuh TZ4Acetylcholinesterase 3.1.1.7 0.800
2xuf TZ4Acetylcholinesterase 3.1.1.7 0.787
2xug TZ4Acetylcholinesterase 3.1.1.7 0.785
2xuj TZ5Acetylcholinesterase 3.1.1.7 0.713
2xui TZ5Acetylcholinesterase 3.1.1.7 0.696
2xuk TZ5Acetylcholinesterase 3.1.1.7 0.690