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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xug TZ4 Acetylcholinesterase 3.1.1.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xug TZ4Acetylcholinesterase 3.1.1.7 1.177
2xuf TZ4Acetylcholinesterase 3.1.1.7 0.966
2xuh TZ4Acetylcholinesterase 3.1.1.7 0.956
2xuo TZ4Acetylcholinesterase 3.1.1.7 0.866
2xuq TZ4Acetylcholinesterase 3.1.1.7 0.785
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.744
2xuk TZ5Acetylcholinesterase 3.1.1.7 0.671