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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xpk Z0M O-GlcNAcase NagJ

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xpk Z0MO-GlcNAcase NagJ / 1.255
2j62 GSZO-GlcNAcase NagJ / 1.000
2wb5 VGBO-GlcNAcase NagJ / 0.998
2cbj OANO-GlcNAcase NagJ / 0.868
2wca NP6O-GlcNAcase BT_4395 / 0.781
4azh LOGBeta-N-acetylhexosaminidase 3.2.1.52 0.695
2j7c IDEBeta-glucosidase A 3.2.1.21 0.675
2xwe AMFGlucosylceramidase 3.2.1.45 0.673
5ief NBVNeutral alpha-glucosidase AB 3.2.1.84 0.669
4pb2 5UDNucleoside permease / 0.655