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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xnc FAD Ferredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.198
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.014
3vo2 FADFerredoxin--NADP reductase / 1.014
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.002
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.002
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.000
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.997
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.997
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.997
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.995
1que FADFerredoxin--NADP reductase 1.18.1.2 0.995
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.991
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.991
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.988
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.982
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.982
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.977
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.976
1gaw FADFerredoxin / 0.968
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.968
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.966
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.963
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.954
2rc5 FADFerredoxin--NADP reductase / 0.954
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.951
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.951
1sm4 FADFerredoxin--NADP reductase / 0.944
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.940
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.937
2rc6 FADFerredoxin--NADP reductase / 0.937
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.924
3w5u FADFerredoxin / 0.922
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.909
3qfs FADNADPH--cytochrome P450 reductase / 0.905
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.904
1gaq FADFerredoxin / 0.898
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.890
3qfc FADNADPH--cytochrome P450 reductase / 0.890
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.882
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.876
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.873
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.868
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.862
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.861
3qfr FADNADPH--cytochrome P450 reductase / 0.860
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.849
3qe2 FADNADPH--cytochrome P450 reductase / 0.847
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.847
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.846
4yao FADNADPH--cytochrome P450 reductase / 0.842
2bf4 FADNADPH--cytochrome P450 reductase / 0.839
4yaf FADNADPH--cytochrome P450 reductase / 0.829
4y7c FADNADPH--cytochrome P450 reductase / 0.826
1cqx FADFlavohemoprotein / 0.822
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.816
3ojw FADNADPH--cytochrome P450 reductase / 0.814
4y9r FADNADPH--cytochrome P450 reductase / 0.812
4y9u FADNADPH--cytochrome P450 reductase / 0.809
1amo FADNADPH--cytochrome P450 reductase / 0.808
3qft FADNADPH--cytochrome P450 reductase / 0.807
4yau FADNADPH--cytochrome P450 reductase / 0.804
1ja0 FADNADPH--cytochrome P450 reductase / 0.800
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.800
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.795
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.792
1tll FADNitric oxide synthase, brain 1.14.13.39 0.790
3fpk FADFerredoxin-NADP reductase / 0.786
1ja1 FADNADPH--cytochrome P450 reductase / 0.779
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.777
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.770
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.770
1gvh FADFlavohemoprotein / 0.767
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.765
2bn4 FADNADPH--cytochrome P450 reductase / 0.758
2pia FMNPhthalate dioxygenase reductase / 0.756
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.749
3ojx FADNADPH--cytochrome P450 reductase / 0.749
2eix FADNADH-cytochrome b5 reductase / 0.740
2gpj FADSiderophore-interacting protein / 0.737
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.724
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.717
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.704
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.704
3e4v FMNUncharacterized protein / 0.701
2hq9 FADMll6688 protein / 0.690
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.690
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.687
2ptf FMNUncharacterized protein MTH_863 / 0.683
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.682
3in6 FMNUncharacterized protein / 0.681
4b4d FADFerredoxin-NADP reductase / 0.676
4l82 FMNUncharacterized protein / 0.673
3q9t FAYUncharacterized protein / 0.670
4rhe FMNFlavin prenyltransferase UbiX / 0.667
2vnh FADNADPH:ferredoxin reductase / 0.663
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.662
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.661
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.658
2d29 FADAcyl-CoA dehydrogenase / 0.656
2vnk FADNADPH:ferredoxin reductase / 0.656
3vy2 FMNFMN-binding protein / 0.656
3r5z F42Uncharacterized protein / 0.655
3a6r FMNFMN-binding protein / 0.653
3a6q FMNFMN-binding protein / 0.652
3pl8 FADPyranose 2-oxidase / 0.652
1wlk FMNFMN-binding protein / 0.651
2vnj FADNADPH:ferredoxin reductase / 0.651