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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xlu NA7 Putative flavin-containing monooxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xlu NA7Putative flavin-containing monooxygenase / 1.091
2xlt NA0Putative flavin-containing monooxygenase / 0.870
2xlp NAPPutative flavin-containing monooxygenase / 0.806
2xlr NAPPutative flavin-containing monooxygenase / 0.800
2xls NAPPutative flavin-containing monooxygenase / 0.783
2vq7 NAPPutative flavin-containing monooxygenase / 0.775
2vqb NAPPutative flavin-containing monooxygenase / 0.767
2xvh NAPPutative flavin-containing monooxygenase / 0.736
4b68 NAPL-ornithine N(5)-monooxygenase / 0.736
4b65 NDPL-ornithine N(5)-monooxygenase / 0.720
2q0k NAPThioredoxin reductase 1.8.1.9 0.716
3s5w NAPL-ornithine N(5)-monooxygenase / 0.711
3ean NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.708
4b64 NAPL-ornithine N(5)-monooxygenase / 0.705
4b63 NAPL-ornithine N(5)-monooxygenase / 0.703
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.701
2c3c NAP2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.696
4b67 NAPL-ornithine N(5)-monooxygenase / 0.686
3up4 NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.685
4b66 NAPL-ornithine N(5)-monooxygenase / 0.679
5cku NAPL-ornithine N(5)-monooxygenase / 0.672
3gwf NAPCyclohexanone monooxygenase / 0.666
3lzw NAPFerredoxin--NADP reductase 2 1.18.1.2 0.662
3phi NDPShikimate dehydrogenase (NADP(+)) / 0.659
2q0l NAPThioredoxin reductase 1.8.1.9 0.658
1lqu NDPNADPH-ferredoxin reductase FprA 1.18.1.2 0.654
4d04 NAPPhenylacetone monooxygenase 1.14.13.92 0.652