Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xlp NAP Putative flavin-containing monooxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xlp NAPPutative flavin-containing monooxygenase / 1.177
2vqb NAPPutative flavin-containing monooxygenase / 0.910
2vq7 NAPPutative flavin-containing monooxygenase / 0.882
2xls NAPPutative flavin-containing monooxygenase / 0.811
2xlu NA7Putative flavin-containing monooxygenase / 0.806
2xvh NAPPutative flavin-containing monooxygenase / 0.793
3ean NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.774
2xlt NA0Putative flavin-containing monooxygenase / 0.770
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.754
4b65 NDPL-ornithine N(5)-monooxygenase / 0.736
4b68 NAPL-ornithine N(5)-monooxygenase / 0.731
3up4 NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.729
3uoz NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.727
4gcm NAPThioredoxin reductase 1.8.1.9 0.725
2c3c NAP2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.716
3uoy NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.713
3s5w NAPL-ornithine N(5)-monooxygenase / 0.712
2xlr NAPPutative flavin-containing monooxygenase / 0.711
2gv8 NDPThiol-specific monooxygenase 1.14.13 0.708
4b67 NAPL-ornithine N(5)-monooxygenase / 0.702
2ylx NAPPhenylacetone monooxygenase 1.14.13.92 0.698
4ovi N01Phenylacetone monooxygenase 1.14.13.92 0.698
3gwd NAPCyclohexanone monooxygenase / 0.694
3up5 NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.692
2ym2 NAPPhenylacetone monooxygenase 1.14.13.92 0.687
2ylr NAPPhenylacetone monooxygenase 1.14.13.92 0.686
4d03 NAPPhenylacetone monooxygenase 1.14.13.92 0.686
3gwf NAPCyclohexanone monooxygenase / 0.683
2q0k NAPThioredoxin reductase 1.8.1.9 0.672
2ym1 NAPPhenylacetone monooxygenase 1.14.13.92 0.668
4b63 NAPL-ornithine N(5)-monooxygenase / 0.664
4b66 NAPL-ornithine N(5)-monooxygenase / 0.664
3phi NDPShikimate dehydrogenase (NADP(+)) / 0.663
4b64 NAPL-ornithine N(5)-monooxygenase / 0.663
4d04 NAPPhenylacetone monooxygenase 1.14.13.92 0.660
4tlz NAPKtzI / 0.660
1lqu NDPNADPH-ferredoxin reductase FprA 1.18.1.2 0.657
2ylt NAPPhenylacetone monooxygenase 1.14.13.92 0.653
3lzx NAPFerredoxin--NADP reductase 2 1.18.1.2 0.652