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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xej OKD Glutamate carboxypeptidase 2 3.4.17.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xej OKDGlutamate carboxypeptidase 2 3.4.17.21 1.431
2xef AR8Glutamate carboxypeptidase 2 3.4.17.21 1.328
2xeg CI9Glutamate carboxypeptidase 2 3.4.17.21 1.314
2xei ARKGlutamate carboxypeptidase 2 3.4.17.21 1.211
2c6c 24IGlutamate carboxypeptidase 2 3.4.17.21 0.693
1zha PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.652