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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xcl ANP Phosphoribosylamine--glycine ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xcl ANPPhosphoribosylamine--glycine ligase / 1.042
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.678
4dca ADPAminoglycoside phosphotransferase / 0.672
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.669
4h3p ANPMitogen-activated protein kinase 1 2.7.11.24 0.657
2nv4 SAMS-adenosyl-L-methionine-binding protein AF_0241 / 0.651